An introduction to High Performance Computing
- Owner: Roberto Bendinelli
- Created on Jul 31, 2024
This course provides a comprehensive introduction to high-performance computing (HPC), covering fundamental concepts such as accessing and navigating HPC clusters using the Unix shell, transferring files, submitting and managing jobs through a scheduler, and understanding the benefits and limitations of parallel execution. The materials also introduce HPC workflow management with Snakemake, enabling learners to construct reliable, scalable, and reproducible scientific workflows suitable for both academic and industrial environments, particularly relevant for artificial intelligence applications requiring large-scale or specialised computation.
Datasets in the Collection
This video shows how to use Snakemake to write rules, run commands and MPI applications on a cluster, and combine multiple steps and files into a complete workflow.
*For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning 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*For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning 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Owner: Roberto Bendinelli
Created on Oct 23, 2025
Learn the essentials of using an HPC system, from logging in to running parallel jobs.
*For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.*[slides][][endslides]
*For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.*[slides][][endslides]
Owner: Roberto Bendinelli
Created on Jul 31, 2024
This workshop introduces the basics of high-performance computing, explaining when to use a computing cluster and how to run and manage jobs on it effectively.
*For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.*[slides][{"0":"00:00:00.000","1":"00:02:52.288","2":"68f9e93de4b021481f74038b","3":"0.0","isRemoved":false},{"0":"00:02:52.288","1":"00:11:06.888","2":"68f9e93de4b021481f74038d","3":"172.288","isRemoved":false},{"0":"00:11:06.888","1":"00:11:42.608","2":"68f9e93de4b021481f74038f","3":"666.888","isRemoved":false},{"0":"00:11:42.608","1":"00:12:41.048","2":"68f9e93de4b021481f740391","3":"702.6080000000001","isRemoved":false},{"0":"00:12:41.048","1":"00:13:21.968","2":"68f9e93de4b021481f740393","3":"761.048","isRemoved":false},{"0":"00:13:21.968","1":"00:16:14.008","2":"68f9e93de4b021481f740395","3":"801.9680000000001","isRemoved":false},{"0":"00:16:14.008","1":"00:19:54.368","2":"68f9e93de4b021481f740397","3":"974.008","isRemoved":false},{"0":"00:19:54.368","1":"00:21:05.768","2":"68f9e93de4b021481f740399","3":"1194.3680000000002","isRemoved":false},{"0":"00:21:05.768","1":"00:30:55.048","2":"68f9e93de4b021481f74039b","3":"1265.768","isRemoved":false},{"0":"00:30:55.048","1":"01:03:53.688","2":"68f9e93de4b021481f74039d","3":"1855.048","isRemoved":false},{"0":"01:03:53.688","1":"01:25:39.128","2":"68f9e93de4b021481f74039f","3":"3833.688","isRemoved":false},{"0":"01:25:39.128","1":"01:41:41.432","2":"68f9e93de4b021481f7403a1","3":"5139.128000000001","isRemoved":false},{"0":"01:41:41.432","1":"01:46:00.272","2":"68f9e93de4b021481f7403a3","3":"6101.432000000001","isRemoved":false},{"0":"01:46:00.272","1":"01:47:06.832","2":"68f9e93ee4b021481f7403a5","3":"6360.272","isRemoved":false},{"0":"01:47:06.832","1":"01:57:48.872","2":"68f9e93ee4b021481f7403a7","3":"6426.832","isRemoved":false},{"0":"01:57:48.872","1":"01:58:53.392","2":"68f9e93ee4b021481f7403a9","3":"7068.872","isRemoved":false},{"0":"01:58:53.392","1":"02:02:35.312","2":"68f9e93ee4b021481f7403ab","3":"7133.392000000001","isRemoved":false},{"0":"02:02:35.312","1":"02:03:16.472","2":"68f9e93ee4b021481f7403ad","3":"7355.312","isRemoved":false},{"0":"02:03:16.472","1":"02:05:13.352","2":"68f9e93ee4b021481f7403af","3":"7396.472000000001","isRemoved":false},{"0":"02:05:13.352","1":"02:05:55.352","2":"68f9e93ee4b021481f7403b1","3":"7513.352000000001","isRemoved":false},{"0":"02:05:55.352","1":"02:09:00.592","2":"68f9e93ee4b021481f7403b3","3":"7555.352000000001","isRemoved":false},{"0":"02:09:00.592","1":"02:10:47.672","2":"68f9e93ee4b021481f7403ca","3":"7740.592000000001","isRemoved":false},{"0":"02:10:47.672","1":"02:11:00.792","2":"68f9e93ee4b021481f7403cc","3":"7847.6720000000005","isRemoved":false}][endslides]
*For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.*[slides][{"0":"00:00:00.000","1":"00:02:52.288","2":"68f9e93de4b021481f74038b","3":"0.0","isRemoved":false},{"0":"00:02:52.288","1":"00:11:06.888","2":"68f9e93de4b021481f74038d","3":"172.288","isRemoved":false},{"0":"00:11:06.888","1":"00:11:42.608","2":"68f9e93de4b021481f74038f","3":"666.888","isRemoved":false},{"0":"00:11:42.608","1":"00:12:41.048","2":"68f9e93de4b021481f740391","3":"702.6080000000001","isRemoved":false},{"0":"00:12:41.048","1":"00:13:21.968","2":"68f9e93de4b021481f740393","3":"761.048","isRemoved":false},{"0":"00:13:21.968","1":"00:16:14.008","2":"68f9e93de4b021481f740395","3":"801.9680000000001","isRemoved":false},{"0":"00:16:14.008","1":"00:19:54.368","2":"68f9e93de4b021481f740397","3":"974.008","isRemoved":false},{"0":"00:19:54.368","1":"00:21:05.768","2":"68f9e93de4b021481f740399","3":"1194.3680000000002","isRemoved":false},{"0":"00:21:05.768","1":"00:30:55.048","2":"68f9e93de4b021481f74039b","3":"1265.768","isRemoved":false},{"0":"00:30:55.048","1":"01:03:53.688","2":"68f9e93de4b021481f74039d","3":"1855.048","isRemoved":false},{"0":"01:03:53.688","1":"01:25:39.128","2":"68f9e93de4b021481f74039f","3":"3833.688","isRemoved":false},{"0":"01:25:39.128","1":"01:41:41.432","2":"68f9e93de4b021481f7403a1","3":"5139.128000000001","isRemoved":false},{"0":"01:41:41.432","1":"01:46:00.272","2":"68f9e93de4b021481f7403a3","3":"6101.432000000001","isRemoved":false},{"0":"01:46:00.272","1":"01:47:06.832","2":"68f9e93ee4b021481f7403a5","3":"6360.272","isRemoved":false},{"0":"01:47:06.832","1":"01:57:48.872","2":"68f9e93ee4b021481f7403a7","3":"6426.832","isRemoved":false},{"0":"01:57:48.872","1":"01:58:53.392","2":"68f9e93ee4b021481f7403a9","3":"7068.872","isRemoved":false},{"0":"01:58:53.392","1":"02:02:35.312","2":"68f9e93ee4b021481f7403ab","3":"7133.392000000001","isRemoved":false},{"0":"02:02:35.312","1":"02:03:16.472","2":"68f9e93ee4b021481f7403ad","3":"7355.312","isRemoved":false},{"0":"02:03:16.472","1":"02:05:13.352","2":"68f9e93ee4b021481f7403af","3":"7396.472000000001","isRemoved":false},{"0":"02:05:13.352","1":"02:05:55.352","2":"68f9e93ee4b021481f7403b1","3":"7513.352000000001","isRemoved":false},{"0":"02:05:55.352","1":"02:09:00.592","2":"68f9e93ee4b021481f7403b3","3":"7555.352000000001","isRemoved":false},{"0":"02:09:00.592","1":"02:10:47.672","2":"68f9e93ee4b021481f7403ca","3":"7740.592000000001","isRemoved":false},{"0":"02:10:47.672","1":"02:11:00.792","2":"68f9e93ee4b021481f7403cc","3":"7847.6720000000005","isRemoved":false}][endslides]
Owner: Roberto Bendinelli
Created on Jul 31, 2024
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