BioNT
BioNT provides training in digital skills relevant to the biotech and biomed sectors, while also fostering a community in these fields, engaging experienced learners and trainers. These self-paced learning courses cover topics from introductions to bioinformatics to machine learning, which you can use to learn these skills at your own pace.
The Space team has made the following datasets and collections publicly available. You must be a logged-in member of the Space to access all the datasets and collections.
Datasets
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Data Management: FAIR Principles & Reproducible Analysis
For each of the sections covered in this course, please visit and follow along with the linked training materials.
Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning 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Reference-based RNA-Seq data Analysis: Differnetal Gene Expression analysis, Visualization and GO and KEGG pathway analysis
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Data Management: Foundations & Planning
For each of the sections covered in this course, please visit and follow along with the linked training materials.
Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning 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Reference-based RNA-Seq data Analysis: Counting using RNASTAR
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Reference-based RNA-Seq data Analysis: Counting usind FeatureCounts
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Reference-based RNA-Seq data Analysis: First setps unitil mapping
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Introduction to Transcriptomics presentation
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Mapping hands-on
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Mapping presentation
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
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Awareness in Data Management and Analysis for Industry and Research
This workshop covers essential research data management skills. The first part introduces data management fundamentals, best practices, European data spaces, and Data Management Plan creation. The second part focuses on practical implementation: data organisation, FAIR principles, Electronic Lab Notebooks, and reproducible data analysis using tools like Git, Zenodo, and Conda. Interactive exercises throughout help participants apply concepts to real-world research scenarios.
A practical introduction to bioinformatics and RNA-seq using Galaxy
This course provides a comprehensive introduction to RNA-sequencing (RNA-seq) data analysis using the Galaxy platform. Galaxy offers an accessible, user-friendly, and FAIR environment that empowers researchers without programming experience to perform complex bioinformatics analyses. The course begins with an introduction to Galaxy, followed by tutorials on sequencing quality control and read mapping. Participants will then learn both the foundational and advanced steps of RNA-seq data analysis, including quantification and differential expression. The course concludes with an overview of relevant data types, databases, and resources to support further exploration and interpretation of RNA-seq results.
BioNT Community Event & CarpentryConnect Heidelberg 2024
[ordering]manual[endordering][collection_order]["6744a8c8e4b0846534895a56","6744a8d8e4b0846534895a5b"][endcollection_order]
An introduction to High Performance Computing
This course provides a comprehensive introduction to high-performance computing (HPC), covering fundamental concepts such as accessing and navigating HPC clusters using the Unix shell, transferring files, submitting and managing jobs through a scheduler, and understanding the benefits and limitations of parallel execution. The materials also introduce HPC workflow management with Snakemake, enabling learners to construct reliable, scalable, and reproducible scientific workflows suitable for both academic and industrial environments, particularly relevant for artificial intelligence applications requiring large-scale or specialised computation.
From zero to hero with Python
This practical introduction to programming languages will cover all basic concepts needed to program in Python3 while also demonstrating how to showcase code and its results on a website. Thanks to its simple syntaxes and its wide range of usages, the programming language Python is considered an excellent candidate to begin a programming journey[ordering]manual[endordering]
The following datasets have been published through this Space and any affiliated Spaces.
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