A practical introduction to bioinformatics and RNA-seq using Galaxy

This course provides a comprehensive introduction to RNA-sequencing (RNA-seq) data analysis using the Galaxy platform. Galaxy offers an accessible, user-friendly, and FAIR environment that empowers researchers without programming experience to perform complex bioinformatics analyses. The course begins with an introduction to Galaxy, followed by tutorials on sequencing quality control and read mapping. Participants will then learn both the foundational and advanced steps of RNA-seq data analysis, including quantification and differential expression. The course concludes with an overview of relevant data types, databases, and resources to support further exploration and interpretation of RNA-seq results.

Datasets in the Collection

Thumbnail of Reference-based RNA-Seq data Analysis: Differnetal Gene Expression analysis, Visualization and GO and KEGG pathway analysis
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Created on Nov 27, 2025
Thumbnail of Reference-based RNA-Seq data Analysis: Counting using RNASTAR
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Created on Nov 27, 2025
Thumbnail of Reference-based RNA-Seq data Analysis: Counting usind FeatureCounts
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Created on Nov 26, 2025
Thumbnail of Reference-based RNA-Seq data Analysis: First setps unitil mapping
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Created on Nov 26, 2025
Thumbnail of Introduction to Transcriptomics presentation
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Created on Nov 26, 2025
Thumbnail of Mapping hands-on
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Created on Nov 26, 2025
Thumbnail of Mapping presentation
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Created on Nov 26, 2025
Thumbnail of Sequencing analysis quality control hands-on
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Created on Nov 26, 2025
Thumbnail of Sequencing analysis quality control presentation
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Created on Nov 26, 2025
Thumbnail of Galaxy Introducion: From Peaks to Genes hands-on
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Created on Nov 26, 2025
Thumbnail of Galaxy Introduction presentation
For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.
Created on Nov 26, 2025

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