Reference-based RNA-Seq data Analysis: First setups until mapping

This tutorial demonstrates RNA-Seq mapping workflows, from interpreting MultiQC/Falco reports to choosing a mapper and evaluating the resulting alignments. *For each of the sections covered in this course, please visit and follow along with the linked training materials. Additionally, you will find below a link to the history pad used during the live version of this course. Feel free to refer to it for exercises and Q&A, which might improve your learning experience.*[slides][{"0":"00:00:00.000","1":"00:01:44.080","2":"696cfe5de4b0e8ba829f9f80","3":"0.0","isRemoved":false},{"0":"00:01:44.080","1":"00:03:18.120","2":"696cfe5de4b0e8ba829f9f82","3":"104.08000000000001","isRemoved":false},{"0":"00:03:18.120","1":"00:03:48.760","2":"696cfe5de4b0e8ba829f9f84","3":"198.12","isRemoved":false},{"0":"00:03:48.760","1":"00:04:48.000","2":"696cfe5de4b0e8ba829f9f86","3":"228.76000000000002","isRemoved":false},{"0":"00:04:48.000","1":"00:05:24.720","2":"696cfe5de4b0e8ba829f9f88","3":"288.0","isRemoved":false},{"0":"00:05:24.720","1":"00:06:19.240","2":"696cfe5de4b0e8ba829f9f8a","3":"324.72","isRemoved":false},{"0":"00:06:19.240","1":"00:06:56.320","2":"696cfe5de4b0e8ba829f9f8c","3":"379.24","isRemoved":false},{"0":"00:06:56.320","1":"00:07:37.480","2":"696cfe5de4b0e8ba829f9f8e","3":"416.32000000000005","isRemoved":false},{"0":"00:07:37.480","1":"00:08:19.600","2":"696cfe5de4b0e8ba829f9f90","3":"457.48","isRemoved":false},{"0":"00:08:19.600","1":"00:09:05.760","2":"696cfe5de4b0e8ba829f9f92","3":"499.6","isRemoved":false},{"0":"00:09:05.760","1":"00:09:49.080","2":"696cfe5de4b0e8ba829f9f94","3":"545.76","isRemoved":false},{"0":"00:09:49.080","1":"00:10:48.960","2":"696cfe5de4b0e8ba829f9f96","3":"589.08","isRemoved":false},{"0":"00:10:48.960","1":"00:11:10.440","2":"696cfe5de4b0e8ba829f9f98","3":"648.96","isRemoved":false},{"0":"00:11:10.440","1":"00:12:14.280","2":"696cfe5de4b0e8ba829f9f9a","3":"670.44","isRemoved":false},{"0":"00:12:14.280","1":"00:12:49.840","2":"696cfe5de4b0e8ba829f9f9c","3":"734.2800000000001","isRemoved":false},{"0":"00:12:49.840","1":"00:13:11.440","2":"696cfe5de4b0e8ba829f9f9e","3":"769.84","isRemoved":false},{"0":"00:13:11.440","1":"00:13:53.320","2":"696cfe5de4b0e8ba829f9fa0","3":"791.44","isRemoved":false},{"0":"00:13:53.320","1":"00:14:35.400","2":"696cfe5de4b0e8ba829f9fb3","3":"833.32","isRemoved":false},{"0":"00:14:35.400","1":"00:15:20.880","2":"696cfe5de4b0e8ba829f9fb5","3":"875.4000000000001","isRemoved":false},{"0":"00:15:20.880","1":"00:16:02.280","2":"696cfe5de4b0e8ba829f9fb7","3":"920.8800000000001","isRemoved":false},{"0":"00:16:02.280","1":"00:16:32.800","2":"696cfe5de4b0e8ba829f9fb9","3":"962.2800000000001","isRemoved":false},{"0":"00:16:32.800","1":"00:17:31.520","2":"696cfe5de4b0e8ba829f9fbb","3":"992.8000000000001","isRemoved":false},{"0":"00:17:31.520","1":"00:17:55.240","2":"696cfe5de4b0e8ba829f9fbd","3":"1051.52","isRemoved":false},{"0":"00:17:55.240","1":"00:18:23.440","2":"696cfe5de4b0e8ba829f9fbf","3":"1075.24","isRemoved":false},{"0":"00:18:23.440","1":"00:18:55.480","2":"696cfe5de4b0e8ba829f9fc1","3":"1103.44","isRemoved":false},{"0":"00:18:55.480","1":"00:19:28.840","2":"696cfe5de4b0e8ba829f9fc3","3":"1135.48","isRemoved":false},{"0":"00:19:28.840","1":"00:20:05.560","2":"696cfe5de4b0e8ba829f9fc5","3":"1168.8400000000001","isRemoved":false},{"0":"00:20:05.560","1":"00:20:50.840","2":"696cfe5de4b0e8ba829f9fc7","3":"1205.5600000000002","isRemoved":false},{"0":"00:20:50.840","1":"00:21:16.400","2":"696cfe5de4b0e8ba829f9fc9","3":"1250.8400000000001","isRemoved":false},{"0":"00:21:16.400","1":"00:21:44.720","2":"696cfe5ee4b0e8ba829f9fcb","3":"1276.4","isRemoved":false},{"0":"00:21:44.720","1":"00:22:33.720","2":"696cfe5ee4b0e8ba829f9fcd","3":"1304.72","isRemoved":false},{"0":"00:22:33.720","1":"00:22:59.640","2":"696cfe5ee4b0e8ba829f9fcf","3":"1353.72","isRemoved":false},{"0":"00:22:59.640","1":"00:23:52.560","2":"696cfe5ee4b0e8ba829f9fd1","3":"1379.64","isRemoved":false},{"0":"00:23:52.560","1":"00:24:36.120","2":"696cfe5ee4b0e8ba829f9fd3","3":"1432.5600000000002","isRemoved":false},{"0":"00:24:36.120","1":"00:24:57.040","2":"696cfe5ee4b0e8ba829f9fd5","3":"1476.1200000000003","isRemoved":false},{"0":"00:24:57.040","1":"00:25:30.680","2":"696cfe5ee4b0e8ba829f9fd7","3":"1497.0400000000002","isRemoved":false},{"0":"00:25:30.680","1":"00:25:57.240","2":"696cfe5ee4b0e8ba829f9fd9","3":"1530.68","isRemoved":false},{"0":"00:25:57.240","1":"00:26:17.760","2":"696cfe5ee4b0e8ba829f9fdb","3":"1557.2400000000002","isRemoved":false},{"0":"00:26:17.760","1":"00:26:44.800","2":"696cfe5ee4b0e8ba829f9fdd","3":"1577.7600000000002","isRemoved":false},{"0":"00:26:44.800","1":"00:27:24.240","2":"696cfe5ee4b0e8ba829f9fdf","3":"1604.8000000000002","isRemoved":false},{"0":"00:27:24.240","1":"00:28:02.760","2":"696cfe5ee4b0e8ba829f9fe1","3":"1644.2400000000002","isRemoved":false},{"0":"00:28:02.760","1":"00:29:01.680","2":"696cfe5ee4b0e8ba829f9fe3","3":"1682.7600000000002","isRemoved":false},{"0":"00:29:01.680","1":"00:29:49.720","2":"696cfe5ee4b0e8ba829f9fe5","3":"1741.68","isRemoved":false},{"0":"00:29:49.720","1":"00:30:12.440","2":"696cfe5ee4b0e8ba829f9fe7","3":"1789.7200000000003","isRemoved":false},{"0":"00:30:12.440","1":"00:30:36.000","2":"696cfe5ee4b0e8ba829f9fe9","3":"1812.44","isRemoved":false},{"0":"00:30:36.000","1":"00:31:52.160","2":"696cfe5ee4b0e8ba829f9feb","3":"1836.0000000000002","isRemoved":false},{"0":"00:31:52.160","1":"00:32:15.2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